Imaging & Analysis Services
Expert consulting in advanced microscopy techniques, tissue clearing, 3D cell segmentation, image analysis, and custom optical systems. Leveraging cutting-edge technology to visualize and quantify biological systems.
Core Expertise
Tissue Clearing
Lipid-removal-based tissue clearing protocols for whole-organ transparency. Optimized methods for brain, spinal cord, and other tissue types enabling deep tissue imaging without physical sectioning.
Advanced Microscopy
Expertise in confocal, two-photon, and light-sheet microscopy. Setup optimization, sample preparation, and acquisition protocols for high-quality 3D imaging.
Immunohistochemistry
Antibody staining protocols for tissue sections and whole-mount preparations. Multiplexed labeling strategies for simultaneous visualization of multiple targets.
3D Cell Segmentation
Automated and semi-automated segmentation pipelines for large 3D datasets. Cell counting, morphology analysis, and spatial distribution quantification.
Python/Napari Analysis
Custom image analysis pipelines using Python, Napari, scikit-image, and deep learning tools. Batch processing, visualization, and quantification workflows.
Optical Systems
Design and assembly of custom optical systems for specialized imaging applications. Microscope modification and optimization for specific experimental needs.
Portfolio Examples
What data can you get from imaging? If spatial and cell-type specific information is your question, imaging can be your answer.
Light-sheet microscopy of cleared whole brain: visualize excitatory neuronal distributions and connections
Two-photon imaging of developing adult-born neurons: tracing morphology and migration
3D cell segmentation in densely packed environment
Quantification of spinal cord motor neurons
Typical Project Workflow
Consultation & Planning
Discuss project goals, sample types, and desired outcomes. Develop optimized protocols and timelines.
Sample Preparation & Imaging
Execute tissue processing, staining, clearing, and microscopy according to optimized protocols.
Data Processing & Analysis
Custom analysis pipelines for segmentation, quantification, and statistical analysis.
Results & Visualization
Deliver publication-quality figures, quantitative data, and comprehensive reports.
Ready to Start Your Project?
Contact me to discuss how imaging and analysis services can accelerate your research.
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