Networking & Computation Services
Expert consulting in building high-performance network infrastructure for large dataset hosting and analysis, AI workstation configuration, linux server setup, virtualization, and computational analysis pipelines.
Custom small form-factor network rack for high-performance data hosting and processing: 12TB U.2 NVMe solid state storage, 10GbE network connection, NVIDIA GPU compute, 15W idle power consumption
High-Performance Networking
Design and implementation of enterprise-grade network infrastructure optimized for scientific computing, large dataset management, and secure remote access. Perfect for small groups needing data center compute.
- Network architecture design with VLANs and segmentation
- High-bandwidth connections for terabyte-scale data transfer
- Network-attached storage (NAS) with RAID redundancy
- Secure VPN access and firewall configuration
- Performance monitoring and optimization
AI & Machine Learning Infrastructure
Setup and configuration of computing resources for AI-powered data analysis:
High-Performance Workstations
Custom-built workstations with NVIDIA GPUs for accelerated image processing, deep learning, and large-scale data analysis. Optimized for performance, while minimizing noise, and power draw. Over 20 years of workstation building experience.
AI & Machine Learning Servers
Dedicated server infrastructure for running inference, batch processing, and continuous analysis workflows. Docker containerization or virtualization for reproducible environments.
Data Pipelines
Automated workflows for preprocessing, analysis, and visualization of scientific datasets. Integration with cloud services or keep it local with your own hardware.
Single-Cell Sequencing Analysis
Comprehensive computational analysis of single-cell and single-nucleus RNA-seq data:
Single-cell RNA-seq data analysis pipeline with clustering and cell type identification (Pekarek et al., 2022)
Analysis Capabilities
- Quality Control & Preprocessing: Cell filtering, normalization, and batch correction
- Dimensional Reduction: PCA, t-SNE, UMAP for visualization
- Clustering & Cell Type Identification: Automated and manual annotation strategies
- Differential Expression: Statistical analysis of gene expression changes
- Trajectory Analysis: Pseudotime and developmental lineage inference
- Integration: Multi-sample and multi-condition dataset integration
- Visualization: Publication-quality plots and interactive reports
Data Management Solutions
Storage Infrastructure
Network-attached storage systems with redundancy, automated backups, and high-speed access. Optimized for terabyte-scale imaging datasets.
Data Organization
File structure design, metadata management, and database systems for efficient data retrieval and analysis reproducibility.
Cloud Integration
Hybrid local/cloud strategies for scalable storage and computing. Cost-effective solutions for long-term archival and burst computing needs.
Typical Service Offerings
Needs Assessment
Evaluate current infrastructure, data volumes, and computing requirements. Identify bottlenecks and optimization opportunities.
System Design
Develop customized solutions tailored to your specific research needs and budget. Hardware selection, network topology, and software stack recommendations.
Implementation
Hands-on setup and configuration of hardware, network, and software components. Testing and optimization for peak performance.
Training & Support
Comprehensive documentation, user training, and ongoing support for maintaining and troubleshooting your infrastructure.
Ready to Build Your Infrastructure?
Contact me to discuss how computational infrastructure can accelerate your research.
Get in Touch